Strain
The primary key for this table is aaid
| Name | Type | Required |
|---|---|---|
| strain | string | Yes (Primary Key) |
| baseStrain | decimal | Yes, but default set to 0.00000 |
| genotype1 | string | yes |
| perturbation1 | string | yes, default 'none' |
| marker1 | string | yes, choices |
| genotype2 | string | yes, default 'none' |
| perturbation2 | string | yes, default 'none' |
| marker2 | string | yes, choices |
| strainNotes | string | yes, default 'none' |
[KEY] and [REQUIRED] columns should be included in every sheet. [OPTIONAL] columns must be included when there are samples which would have non-empty entries in those columns.
strain
A unique name. No spaces. Camelcase or underscores -- you may mix -- clarity is key.
baseStrain
The parent strain -- meant to differentiate from clinical strains
genotype1
perturbed locus
perturbation1
One of the following
- none (default)
- deletion
- over
- swap
marker1
One of the following
- none (default)
- NAT
- G418
genotype2
Second perturbation, if one exists. Default 'none'
perturbation2
One of the following
- none (default)
- deletion
- over
- swap
marker2
One of the following
- none (default)
- NAT
- G418
strainNotes
Things we should know about a given strain. If the strain is bad, use
bad_strain. Default 'none'